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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        About MultiQC

        This report was generated using MultiQC, version 1.29

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-08-09, 17:37 IDT based on data in: /lustre1/home/mass/amalia/montipora_mapping/Ariana_samples/fastp_reports

        General Statistics

        Showing 48/48 rows and 5/7 columns.
        Sample Name% Duplication% > Q30Mb Q30 basesReads After FilteringGC content% PF% Adapter
        SRR14864064_1
        13.8%
        93.3%
        12675.2Mb
        95.8M
        46.0%
        97.3%
        26.8%
        SRR14864065_1
        15.7%
        93.2%
        11136.3Mb
        82.4M
        46.0%
        98.7%
        17.6%
        SRR14864066_1
        14.5%
        93.3%
        11081.3Mb
        88.7M
        47.3%
        99.0%
        22.7%
        SRR14864067_1
        11.8%
        92.8%
        11101.9Mb
        81.6M
        45.9%
        99.2%
        12.3%
        SRR14864068_1
        10.9%
        92.9%
        9446.6Mb
        69.3M
        46.0%
        99.2%
        11.9%
        SRR14864069_1
        11.5%
        92.9%
        9797.2Mb
        72.0M
        45.2%
        99.2%
        13.0%
        SRR14864070_1
        10.7%
        92.9%
        9811.9Mb
        72.3M
        44.7%
        99.2%
        13.9%
        SRR14864071_1
        12.7%
        93.2%
        10439.3Mb
        77.6M
        45.7%
        99.3%
        20.5%
        SRR14864072_1
        11.1%
        93.2%
        9336.5Mb
        70.9M
        46.3%
        98.2%
        28.4%
        SRR22293445
        13.5%
        90.5%
        357.4Mb
        3.9M
        40.6%
        99.1%
        SRR22293446
        14.2%
        90.0%
        377.1Mb
        4.1M
        40.3%
        98.8%
        SRR22293447
        15.2%
        90.3%
        416.9Mb
        4.6M
        41.3%
        99.0%
        SRR22293448
        15.2%
        91.4%
        389.2Mb
        4.2M
        42.3%
        99.0%
        SRR22293449
        15.4%
        90.0%
        381.1Mb
        4.2M
        41.6%
        98.7%
        SRR22293450
        16.1%
        90.5%
        408.7Mb
        4.5M
        41.7%
        98.7%
        SRR22293451
        15.1%
        90.6%
        481.9Mb
        5.3M
        39.9%
        98.8%
        SRR22293452
        12.8%
        90.1%
        381.8Mb
        4.2M
        40.4%
        99.1%
        SRR22293453
        12.7%
        89.1%
        543.4Mb
        6.0M
        38.9%
        98.6%
        SRR22293454
        11.5%
        89.6%
        344.1Mb
        3.8M
        38.9%
        98.7%
        SRR22293455
        11.0%
        89.5%
        419.7Mb
        4.6M
        39.9%
        98.6%
        SRR22293456
        12.2%
        90.1%
        419.5Mb
        4.6M
        39.8%
        99.2%
        SRR22293457
        11.2%
        89.2%
        433.2Mb
        4.8M
        38.3%
        98.6%
        SRR22293458
        23.4%
        90.9%
        326.7Mb
        3.6M
        45.5%
        99.0%
        SRR22293459
        25.1%
        90.8%
        316.7Mb
        3.5M
        47.0%
        99.1%
        SRR22293460
        19.9%
        89.3%
        385.5Mb
        4.3M
        42.8%
        98.7%
        SRR22293461
        30.0%
        91.8%
        470.6Mb
        5.1M
        47.2%
        99.2%
        SRR22293462
        32.4%
        92.1%
        460.1Mb
        4.9M
        47.7%
        99.4%
        SRR22293463
        29.7%
        91.4%
        462.3Mb
        5.0M
        47.0%
        99.3%
        SRR22293464
        14.6%
        91.1%
        406.2Mb
        4.4M
        42.5%
        99.0%
        SRR22293465
        26.5%
        91.5%
        392.9Mb
        4.3M
        45.7%
        99.3%
        SRR22293466
        13.6%
        91.2%
        373.7Mb
        4.1M
        41.6%
        99.1%
        SRR22293467
        12.3%
        89.6%
        351.4Mb
        3.9M
        40.9%
        98.6%
        SRR22293468
        15.4%
        91.0%
        353.3Mb
        3.8M
        42.7%
        98.9%
        SRR22293469
        14.7%
        91.7%
        304.4Mb
        3.3M
        42.8%
        98.9%
        SRR22293470
        14.5%
        90.9%
        396.0Mb
        4.3M
        41.6%
        99.1%
        SRR22293471
        21.7%
        89.8%
        420.2Mb
        4.6M
        43.3%
        98.8%
        SRR22293472
        14.6%
        91.5%
        390.6Mb
        4.2M
        42.0%
        99.1%
        SRR22293473
        26.5%
        89.3%
        378.1Mb
        4.2M
        44.4%
        98.8%
        SRR22293474
        12.5%
        90.3%
        339.1Mb
        3.7M
        40.6%
        98.8%
        SRR22293475
        16.3%
        90.0%
        488.6Mb
        5.4M
        40.0%
        98.9%
        SRR22293476
        14.7%
        89.7%
        395.6Mb
        4.4M
        41.3%
        98.5%
        SRR22293477
        14.9%
        90.3%
        450.9Mb
        4.9M
        41.4%
        98.7%
        SRR22293478
        15.0%
        90.6%
        339.0Mb
        3.7M
        41.5%
        99.1%
        SRR22293479
        15.8%
        90.8%
        462.4Mb
        5.0M
        41.3%
        99.1%
        SRR22293480
        28.1%
        91.2%
        398.9Mb
        4.3M
        46.5%
        99.3%
        SRR22293481
        14.5%
        90.7%
        335.4Mb
        3.7M
        41.8%
        99.0%
        SRR22293482
        19.9%
        89.9%
        405.7Mb
        4.5M
        43.1%
        98.9%
        SRR22293483
        23.5%
        89.7%
        416.3Mb
        4.6M
        43.9%
        98.8%

        fastp

        Version: 0.24.1

        All-in-one FASTQ preprocessor (QC, adapters, trimming, filtering, splitting...).URL: https://github.com/OpenGene/fastpDOI: 10.1093/bioinformatics/bty560

        Fastp goes through fastq files in a folder and perform a series of quality control and filtering. Quality control and reporting are displayed both before and after filtering, allowing for a clear depiction of the consequences of the filtering process. Notably, the latter can be conducted on a variety of parameters including quality scores, length, as well as the presence of adapters, polyG, or polyX tailing.

        Filtered Reads

        Filtering statistics of sampled reads.

        Created with MultiQC

        Insert Sizes

        Insert size estimation of sampled reads.

        Created with MultiQC

        Sequence Quality

        Average sequencing quality over each base of all reads.

        Created with MultiQC

        GC Content

        Average GC content over each base of all reads.

        Created with MultiQC

        N content

        Average N content over each base of all reads.

        Created with MultiQC


        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        SoftwareVersion
        fastp0.24.1